Banner

Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs4549528 chr5:49668534 T/C LOC647121 chr1:121260910-121313686:+ 0.36 7.8 3.82E-14 Box Plot
THCA rs4549730 chr8:11239078 T/G SGK223 chr8:8175258-8244008:- 0.45 8.91 1.1E-17 Box Plot
THCA rs45502094 chr4:108608100 CTCTAACACT/C MRPL38 chr17:73894724-73901494:- 0.27 6.02 3.39E-9 Box Plot
THCA rs45509595 chr6:27840926 T/C BTN3A2 chr6:26365387-26378548:+ -0.89 -12.43 6.41E-31 Box Plot
THCA rs45509595 chr6:27840926 T/C RNF5P1 chr8:38458179-38458718:- 0.71 6.13 1.82E-9 Box Plot
THCA rs45509595 chr6:27840926 T/C ZFP57 chr6:29640169-29648887:- 0.93 8.62 9.72E-17 Box Plot
THCA rs45510292 chr10:51821269 C/A FAM21B chr10:47894023-47949412:+ 0.47 7.47 3.94E-13 Box Plot
THCA rs4551075 chr5:46011812 A/T LOC647121 chr1:121260910-121313686:+ 0.38 8.07 5.69E-15 Box Plot
THCA rs4551381 chr8:3235281 G/C CSMD1 chr8:2792875-4852494:- -0.38 -6.04 3.02E-9 Box Plot
THCA rs4552596 chr5:49593239 A/C LOC647121 chr1:121260910-121313686:+ -0.37 -8.01 8.6E-15 Box Plot
THCA rs45527431 chr6:26599509 A/G ZFP57 chr6:29640169-29648887:- 0.93 7.82 3.48E-14 Box Plot
THCA rs4554431 chr8:10771638 T/A SGK223 chr8:8175258-8244008:- 0.33 6.7 5.94E-11 Box Plot
THCA rs4558624 chr2:132188209 A/T CCDC74B chr2:130896860-130902707:- 0.38 6.94 1.26E-11 Box Plot
THCA rs4559208 chr8:11153925 C/G SGK223 chr8:8175258-8244008:- -0.39 -7.48 3.7E-13 Box Plot
THCA rs4562213 chr7:33072999 T/C FKBP9L chr7:55748767-55780945:- 0.4 9.02 4.66E-18 Box Plot